Protein without problems: how protease makes protein foods easier to digest and reduces the risk of fermentation in the gut

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Protease is an enzyme that breaks down proteins into peptides and amino acids, making them available for digestion by the body. It is produced in the stomach (as pepsin), pancreas, and small intestinal mucosa.

Without protease, even the best quality protein (meat, fish, eggs, protein shakes) can remain unabsorbed – and worse, begin to rot in the intestines, causing unpleasant symptoms and overloading the immune system.

Who is in particular need of protease support?

Group of people Why protease is important
Athletes High protein intake, fast metabolism
Older people Decreased pancreatic activity
People with low stomach acidity Poor breakdown of protein in the stomach → small intestine congestion
Patients with SIBP, pancreatitis Disruption of enzyme activity and absorption
People on keto and protein diets Increased protein intake, risk of incomplete digestion

How does protease work?

Protease action starts already in the stomach (pepsin), then the main work continues in the small intestine with trypsin, chymotrypsin and other proteases secreted by the pancreas.

Mechanism:

  1. Protein → cleaved to short peptides

  2. Peptides → amino acids

  3. Amino acids → are absorbed into the bloodstream and used for:

    • muscle synthesis

    • skin renewal

    • production of enzymes, hormones and antibodies

What happens in protease deficiency?

  • Residual proteins are not fully digested

  • The processes of putrefaction begin in the large intestine.

  • Ammonia, indole, skatole – toxic products of metabolism – are released.

  • This can cause bloating, flatulence, constipation, intestinal inflammation.

  • Incomplete assimilation of amino acids appears – the body loses “building material”

Table 1. Symptoms of enzyme deficiency by protein

Symptom Possible explanation
The heaviness after meat Protein is not digested
Bloating, especially after 2-4 hours Fermentation and putrefaction processes
Constipation or smelly stools Accumulation of protein residues
Loss of muscle mass Protein is not digested
Reduced endurance Amino acid deficiency → energy deficiency

Protease in supplements: when and how to take?

Enzyme preparations with protease are most often included in complexes with amylase and lipase (e.g. pancreatin, multienzymes). They are also available as vegan supplements – from mushrooms or pineapple (bromelain), papaya (papain).

Recommendations for admission:

  • When eating heavy protein foods

  • Protein diet

  • After 40-50 years of age – age-related decline in enzymes

  • Symptoms of enzyme deficiency

  • After antibiotics or inflammation of the GI tract

Table 2. Comparison of protease sources

Type of protease Source Particulars of application
Pepsin Animal, from the stomachs Works better with sufficient acidity
Trypsin, chymotrypsin Pancreas Natural, versatile
Bromelain Pineapple Vegan, mild, anti-inflammatory.
Papain Papaya Suitable for sensitive GI tract
Microbial protease Fungi (Aspergillus) Wide pH range, suitable for vegans

Protease and skin: an unexpected connection

Protein-derived amino acids are the building blocks of the skin. When they’re deficient:

  • regeneration of skin cells (wounds take longer to heal),

  • collagen synthesis (flabbiness and wrinkles appear),

  • skin immunity (increased risk of inflammation and infection).

In patients with acne and rosacea, enzyme preparations, including protease, may help reduce inflammation through improved digestion, amino acid absorption and reduction of toxins in the gut.

List of references

  1. Martinsen TC, Bergh K, Waldum HL. The role of pepsin and other proteases in digestion. Scandinavian Journal of Gastroenterology.

  2. Moore DR, et al. (2015). Protein digestion and amino acid absorption: a focus on athletes. International Journal of Sport Nutrition.

  3. Picard M. et al. (2021). Gut-brain-muscle axis: the missing link in fatigue and recovery. Trends in Endocrinology and Metabolism.

  4. PubMed: https://pubmed.ncbi.nlm.nih.gov/22589095/

About the Author

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Nikolay Bondarenko is a Ukrainian dermatologist and expert in skin diseases.   A graduate of Ukraine's leading medical university, he specializes in diagnosing and treating dermatological issues.   As the author of numerous expert articles, he actively contributes to the development of dermatology and shares his knowledge with the medical community.





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